Overview | Bioconductor Motivation | Installation | Loading Packaged Example Data | Microbiome Relative Abundance Example | Single-Cell RNA-seq UMI Count Example | Single-Cell RNA-seq Non-UMI / Read Count Example | Pseudobulk Single-Cell RNA-seq Example | Bulk RNA-seq Count Example | Multi-omics Container | Session Info

Introduction | Overview | Main API | Supported methods | Covariate and longitudinal support | Installation | Bulk RNA-seq Example | Longitudinal HMP2 Example | Microbiome Example | Single-Cell Example | Session information

Introduction | How this fits in a Bioconductor workflow | Workflow at a Glance | Installation | Load Packages | Input Data Contract | Standard Bioconductor Accessors | Minimal MAE Workflow Example | Parameter Reference (Conbin, Multiclass, and Survival) | Common Wrapper Parameters (IntegratedLearner) | Conbin-Specific Parameters (Continuous/Binary Path) | Multiclass-Specific Parameters (Native Multiclass Path) | Survival-Specific Parameters (via ...) | Supported Models and Fusion Modules | Supported Models | Supported Fusion Outputs | Output Reference: What You Get and How to Access It | Conbin Outputs (Binary/Continuous) | Multiclass Outputs | Survival Outputs (Single/Early/Late) | Importance Outputs (Conbin, Multiclass, and Survival) | Quick Access Snippets | Example 1: Binary Outcome (IBD Classification) | Step 1: Load and Inspect Training and Validation Data | Step 2: Inspect Layer Assays | Step 3: Fit the Model | Step 4: Inspect and Interpret Outputs | Example 2: Continuous Outcome (Gestational Age) | Step 1: Load and Inspect Data | Step 2: Fit Continuous Model | Step 3: Evaluate Predictive Accuracy | Step 4: Uncertainty and Feature-Level Interpretation (BART) | Example 3: Multiclass Outcome (Franzosa MAE with External Validation) | Example 4: Survival Outcome (Time-to-event) | Interpret Survival Outputs | Session Information | References | Citation